Publications

Peer-Reviewed Journals
  • Coevolution Drives the Emergence of Complex Traits and Promotes Evolvability
    Zaman L, Meyer, J.R., Devangam, S., Bryson, D.M., Lenski, R.E., and Ofria, C. (in review)
  • History and the Evolutionary Potential of a Complex Feature
    Bryson DM, Lenski RE, and Ofria C. (in preparation)
  1. There and Back Again: Gene-Processing Hardware for the Evolution and Robotic Deployment of Robust Navigation Strategies
    Bryson DM, Wagner AP, and Ofria C.
    To appear in: GECCO ’14: Proceeding of the sixteenth annual conference on Genetic and evolutionary computation conference. ACM, 2014.
  2. From Cues to Signals: Evolution of Interspecific Communication Via Aposematism and Mimicry in a Predator-Prey System
    Lehmann K, Goldman BW, Dworkin I, Bryson DM, and Wagner AP.
    PLoS ONE 9(3): e91783.
    doi:10.1371/journal.pone.0091783
  3. Understanding Evolutionary Potential in Virtual CPU Instruction Set Architectures
    Bryson DM and Ofria C (2013).
    PLoS ONE 8(12): e83242.
    doi:10.1371/journal.pone.0083242
  4. A Case Study of the De Novo Evolution of a Complex Odometric Behavior in Digital Organisms
    Grabowski LM, Bryson DM, Dyer FC, Pennock RT, and Ofria C (2013).
    PLoS ONE 8(4):e60466. doi:10.1371/journal.pone.0060466
  5. Digital Evolution Exhibits Surprising Robustness to Poor Design Decisions
    Bryson DM and Ofria C.
    In Artificial Life 13: Proceedings of the 13th International Conference on the Simulation and Synthesis of Living Systems by Adami C, Bryson DM, Ofria C, and Pennock RT (editors), July 2012, East Lansing, MI, pages 19-26. MIT Press, Cambridge, MA. doi:10.7551/978-0-262-31050-5-ch003
  6. Clever Creatures: Case Studies of Evolved Digital Organisms
    Grabowski L, Bryson DM, Dyer F, Pennock RT, and Ofria C.
    Advances in Artificial Life: ECAL 2011, August 2011, pages 276-283.
  7. Early evolution of memory usage in digital organisms
    Grabowski L, Bryson DM, Dyer F, Ofria C, and Pennock RT.
    Proceedings of the 12th International Conference on the Synthesis and Simulation of Living Systems, 19-23 August 2010, pages 224-231.
  8. Avida: A Software Platform for Research in Computational Evolutionary Biology
    Ofria C, Bryson DM, and Wilke CO.
    Published in Artificial Life Models in Software by Adamatzky A and Komosinski M (Eds.)
    Springer Verlag, London, UK, second edition, July 2009, pages ?-?.
Data Sets

Data from: Understanding Evolutionary Potential in Virtual CPU Instruction Set Architectures
Bryson DM and Ofria C. figshare. http://dx.doi.org/10.6084/m9.figshare.826206

Edited Volumes

Artificial Life 13: Proceedings of the 13th International Conference on the Simulation and Synthesis of Living Systems by Adami C, Bryson DM, Ofria C, and Pennock RT (editors), July 2012, East Lansing, MI. MIT Press, Cambridge, MA. http://mitpress.mit.edu/books/artificial-life-13

Posters

An Analysis of the de novo Evolution of a Complex Odometric Behavior
Grabowski LM, Bryson DM, Dyer FC, Pennock RT, and Ofria C.
Artificial Life 13
East Lansing, MI, July 2012

The Coevolution of Host/Symbiont Digital Organisms
Zaman L, Bryson DM, Lenski RE, and Ofria C.
Evolution 2010, Society for the Study of Evolution
Portland, OR, 25-29 June 2010

Invited Presentations

Python: A Basic Introduction
Association of Computing Machinery, Michigan State University
East Lansing, MI, 30 March 2006
Presentation: pdf

Figure Credit

Sharing computational perspectives Lindley D.
Communications of the ACM 53(7):13-15. July 2010.

Other

The Avida User’s Guide
Ofria C, Bryson DM, Baer B, Nanlohy KG, Lenski RE, and Adami C.
Michigan State University, East Lansing, MI (2008 – present)

Last updated: 2014-03-17

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